Computational studies of snake venom toxins
Author
Ojeda P.G.
Ramírez D.
Alzate-Morales J.
Caballero J.
Kaas Q.
González W.
Abstract
Most snake venom toxins are proteins, and participate to envenomation through a diverse array of bioactivities, such as bleeding, inflammation, and pain, cytotoxic, cardiotoxic or neurotoxic effects. The venom of a single snake species contains hundreds of toxins, and the venoms of the 725 species of venomous snakes represent a large pool of potentially bioactive proteins. Despite considerable discovery efforts, most of the snake venom toxins are still uncharacterized. Modern bioinformatics tools have been recently developed to mine snake venoms, helping focus experimental research on the most potentially interesting toxins. Some computational techniques predict toxin molecular targets, and the binding mode to these targets. This review gives an overview of current knowledge on the ~2200 sequences, and more than 400 three-dimensional structures of snake toxins deposited in public repositories, as well as of molecular modeling studies of the interaction between these toxins and their molecular targets. We also describe how modern bioinformatics have been used to study the snake venom protein phospholipase A2, the small basic myotoxin Crotamine, and the three-finger peptide Mambalgin. © 2017 by the authors. Licensee MDPI, Basel, Switzerland.
Collections
Related items
Showing items related by title, author, creator and subject.
-
Article
Computational analysis and functional prediction of ubiquitin hypothetical protein: A possible target in parkinson disease (2020)
Barragán-Osorio L.; Giraldo G.; Alméciga-Diaz C.J.; Aliev G.; Barreto G.E.; Gonzalez J. (Bentham Science Publishers, 2016) -
Article
Characterization of FCXTH2, a novel xyloglucan endotransglycosylase/hydrolase enzyme of chilean strawberry with hydrolase activity (2020)
Morales-Quintana L.; Beltrán D.; Mendez-Yañez Á.; Valenzuela-Riffo F.; Herrera R.; Moya-León M.A. (MDPI AG, 2020) -
Article
Structural analysis of the woodland strawberry COI1-JAZ1 co-receptor for the plant hormone jasmonoyl-isoleucine (2020)
Valenzuela-Riffo F.; Garrido-Bigotes A.; Figueroa P.M.; Morales-Quintana L.; Figueroa C.R. (Elsevier Inc., 2018)