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Draft genome sequence of the Chilean isolate Aeromonas salmonicida strain CBA100

dc.contributor.authorValdes N.
dc.contributor.authorEspinoza C.
dc.contributor.authorSanhueza L.
dc.contributor.authorGonzalez A.
dc.contributor.authorCorsini G.
dc.contributor.authorTello M.
dc.date.accessioned2020-09-02T22:29:50Z
dc.date.available2020-09-02T22:29:50Z
dc.date.issued2015
dc.identifier10.1093/femsle/fnu062
dc.identifier.citation362, 5, -
dc.identifier.issn03781097
dc.identifier.urihttps://hdl.handle.net/20.500.12728/6475
dc.descriptionWe report the draft genome sequence from Aeromonas salmonicida sp. strain CBA100, which was characterized as an antibiotic-resistant bacterium isolated from infected rainbow trout. The total size of the genome is 4 788 109 bp, with a G + C content of 60.55%. Comparison of its open reading frames shows that the closest homologue to one third of the genes of strain CBA100 are found in A. hydrophila. The strain contains several efflux pumps and putative genes that confer resistance to multiclass antibiotics, including macrolide, β-lactamics, florfenicol and quinolones. The antibiogram profile suggests that efflux pumps are the main mechanism of resistance to non-β-lactamic antibiotics. This is the first genome of a Chilean isolate of A. salmonicida, which should shed light on the design of strain-specific vaccines against this pathogen and reduce the use of antibiotics for preventive treatment in Chilean aquaculture. © FEMS 2014.
dc.language.isoen
dc.publisherOxford University Press
dc.subjectFish pathogen
dc.subjectMultiresistance
dc.subjectVaccine
dc.subjectAeromonas salmonicida
dc.subjectantibiotic resistance
dc.subjectArticle
dc.subjectbacterial genome
dc.subjectbacterial strain
dc.subjectbacterium isolate
dc.subjectDNA base composition
dc.subjectgene sequence
dc.subjectgenome size
dc.subjectnonhuman
dc.subjectopen reading frame
dc.subjectpriority journal
dc.subjectAeromonas salmonicida
dc.subjectanimal
dc.subjectaquaculture
dc.subjectbacterial genome
dc.subjectChile
dc.subjectchromosome map
dc.subjectDNA sequence
dc.subjectdrug effects
dc.subjectfish disease
dc.subjectgene
dc.subjectgenetics
dc.subjectGram negative infection
dc.subjectisolation and purification
dc.subjectmicrobial sensitivity test
dc.subjectmicrobiology
dc.subjectnucleotide sequence
dc.subjectOncorhynchus mykiss
dc.subjectphylogeny
dc.subjectveterinary
dc.subjectAeromonas salmonicida
dc.subjectAnimals
dc.subjectAquaculture
dc.subjectBase Composition
dc.subjectBase Sequence
dc.subjectChile
dc.subjectChromosome Mapping
dc.subjectDrug Resistance, Bacterial
dc.subjectFish Diseases
dc.subjectGenes, MDR
dc.subjectGenome, Bacterial
dc.subjectGram-Negative Bacterial Infections
dc.subjectMicrobial Sensitivity Tests
dc.subjectOncorhynchus mykiss
dc.subjectOpen Reading Frames
dc.subjectPhylogeny
dc.subjectSequence Analysis, DNA
dc.titleDraft genome sequence of the Chilean isolate Aeromonas salmonicida strain CBA100
dc.typeArticle


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